gatk3的最后一个经典版本3.8

kiran 6db9a00a0b SAMFileWriter doesn't appear to flush the buffer when its destructor is called. You have to call the close() method. Also, choose a random base for Ns in the forward and reverse strands so that samtools doesn't pitch a fit. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@338 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-08 21:48:24 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Updated with last week / next week for 6 April.	2009-04-06 14:05:20 +00:00
java	SAMFileWriter doesn't appear to flush the buffer when its destructor is called. You have to call the close() method. Also, choose a random base for Ns in the forward and reverse strands so that samtools doesn't pitch a fit.	2009-04-08 21:48:24 +00:00
python	The system now requires a dictionary file for a fasta file, or it throws an error. You can't just operate without a sequence dictionary any longer. We will transition to a GenomeLoc system that assumes a dictionary is available.	2009-04-07 22:21:57 +00:00
settings	Bump picard and samtools to latest.	2009-03-27 02:26:28 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Removed now-useless FourBaseCaller jar target (FourBaseRecaller replaces it).	2009-04-02 22:13:51 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00