chartl 6db86ae0c6 PAC sets the refseq file to optional. ... Additional ipf for expanding interval lists. Either there's heavy latency on the toro -- or it's not working properly yet (e.g. the system print in the same scope as the file print outputs a line, but no file shows up on the system) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4874 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-18 19:04:52 +00:00
..
qscript	Adding a window size variable to avoid indel genotyper error	2010-12-18 04:19:54 +00:00
src	PAC sets the refseq file to optional.	2010-12-18 19:04:52 +00:00
test/org/broadinstitute/sting/queue	Updated pipeline test to match Eric's changes in r4846.	2010-12-17 19:52:09 +00:00