gatk3的最后一个经典版本3.8

Mark DePristo 6d7d21ca47 Bugfix for incorrect branch diamond merging algorithm ... -- Previous version was just incorrectly accumulating information about nodes that were completely eliminated by the common suffix, so we were dropping some reference connections between vertices. Fixed. In the process simplified the entire algorithm and codebase -- Resolves https://jira.broadinstitute.org/browse/GSA-884		2013-03-20 22:54:37 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Bugfix for incorrect branch diamond merging algorithm	2013-03-20 22:54:37 -04:00
public	Misc. fixes upon pull request review	2013-03-20 22:54:37 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00