gatk-3.8/java
fromer 6d4ec7f9e7 Remove RefSeq INFO from MNPs since annotating them properly
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4784 348d0f76-0448-11de-a6fe-93d51630548a
2010-12-03 19:03:35 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Remove RefSeq INFO from MNPs since annotating them properly 2010-12-03 19:03:35 +00:00
test Set minMQ = max(minMQ, minBQ) for phasing since anyway we cap BQ by MQ; also, lowered MIN_BASE_QUALITY_SCORE for phasing to 17 (was previously 20) 2010-12-03 16:31:13 +00:00