Joel Thibault fd0a02e52e New VCF engine arguments to specify an alternate IndexCreator ... - CatVariants updates to use custom VCF indices - Scala scripts for VCF index testing		2013-12-03 13:31:02 -05:00
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GATKVCFUtilsUnitTest.java	New VCF engine arguments to specify an alternate IndexCreator	2013-12-03 13:31:02 -05:00
GATKVariantContextUtilsUnitTest.java	Change the behavior of SelectVariants for PL/AD when it encounters a record that has lost one or more alternate alleles.	2013-12-03 09:23:03 -05:00
VCFIntegrationTest.java	New VCF engine arguments to specify an alternate IndexCreator	2013-12-03 13:31:02 -05:00
VariantContextBenchmark.java	Created a single sample calling pipeline which leverages the reference model calculation mode of the HaplotypeCaller	2013-09-06 16:56:34 -04:00