Eric Banks 6d0e383a60 Fixing the bundle script ... 1. someone out there busted it when adding high confidence 1000G calls 2. new path to NA12878 bam 3. updated clashing version argument		2013-05-02 09:40:36 -04:00
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R	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
java	Update expected test output for Java 7	2013-05-01 16:18:01 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	ValidatingPileup was renamed to CheckPileup	2013-02-15 11:56:19 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Fixing the bundle script	2013-05-02 09:40:36 -04:00
testdata	Updating the exampleGRP.grp test file	2013-04-13 09:07:13 -04:00