Geraldine Van der Auwera 429582589f Set SAMFileWriter to create index in ReadUtils to fix SplitSamFile issue		2013-11-26 15:54:47 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Set SAMFileWriter to create index in ReadUtils to fix SplitSamFile issue	2013-11-26 15:54:47 -05:00
test	Created a single sample calling pipeline which leverages the reference model calculation mode of the HaplotypeCaller	2013-09-06 16:56:34 -04:00