chartl d6b9b788a8 Renamed -- PlinkRodWithGenomeLoc --> PlinkRod ... Since binary files do not need encoded locus information in the SNP names there's no need to suggest that it is so in the name of the rod git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2671 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-23 18:19:28 +00:00
..
alignment	Support for ad-hoc reference sequences. Also reenabled BWA/Java integration test, which was commented out	2010-01-02 20:19:14 +00:00
gatk	Renamed -- PlinkRodWithGenomeLoc --> PlinkRod	2010-01-23 18:19:28 +00:00
playground/gatk/walkers	Renamed SequenomToVCF as PlinkToVCF. Wiki will be changed accordingly.	2010-01-21 17:35:20 +00:00
utils	Looks bigger than it is:	2010-01-15 00:14:35 +00:00
BaseTest.java	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	Added the capability to allow expressions in an integration test command (i.e. -filter 'foo') by escaping them in the command.	2009-11-24 02:34:48 +00:00