Mauricio Carneiro 5f1afb4136 Fixing an off-by-one clipping error in ReduceReads for reads off the contig ... Reads that are soft-clipped off the contig (before the beginning of the contig) were being soft-clipped to position 0 instead of 1 because of an off-by-one issue. Fixed and included in the integration test.		2012-12-13 22:10:11 -05:00
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gatk	Fixing an off-by-one clipping error in ReduceReads for reads off the contig	2012-12-13 22:10:11 -05:00
utils	Do not let reduced reads get removed in the contamination down-sampling	2012-10-26 02:13:04 -04:00
package-info.java	build system overhaul	2012-05-17 15:16:29 -04:00