gatk3的最后一个经典版本3.8

Mauricio Carneiro 6c8cafba63 CountsWithBases now handles indels ... adding base counts now iterates over the read's cigar string instead of the bases to handle insertions and deletions correctly. * This commit broke other functionality that was relying on the incorrectly formed base counts.		2011-08-26 14:41:16 -04:00
public	Fixed extra reads showing up in Variable Sites	2011-08-23 11:26:00 -04:00
settings	Build.xml -- contracts not built by default. Slightly simpler CSS for dl.	2011-08-19 15:07:26 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Build.xml -- contracts not built by default. Slightly simpler CSS for dl.	2011-08-19 15:07:26 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00