Eric Banks 6c872308d8 Add the capability to the N-cigar splitter to also hard-clip off overhangs based on observed split positions. ... We use a "manager" to keep track of observed splits and previous reads. This can be extended/modified in the future to try to salvage those overhangs instead of hard-clipping them and/or try other possible strategies. Added unit tests and more integration tests.		2014-03-02 21:10:34 -05:00
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src	Add the capability to the N-cigar splitter to also hard-clip off overhangs based on observed split positions.	2014-03-02 21:10:34 -05:00
pom.xml	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00