gatk3的最后一个经典版本3.8

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Eric Banks 6c872308d8 Add the capability to the N-cigar splitter to also hard-clip off overhangs based on observed split positions. We use a "manager" to keep track of observed splits and previous reads. This can be extended/modified in the future to try to salvage those overhangs instead of hard-clipping them and/or try other possible strategies. Added unit tests and more integration tests.		2014-03-02 21:10:34 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Add the capability to the N-cigar splitter to also hard-clip off overhangs based on observed split positions.	2014-03-02 21:10:34 -05:00
public	Attempting to limit gc during Maven tests, using defaults found in JavaCommandLineFunction	2014-03-01 15:24:45 +08:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Adding the external example to the build.	2014-02-15 01:26:07 +08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Separate failsafe directories for each of the integration test types [#66515572 ]	2014-02-27 04:43:39 +08:00

The Genome Analysis Toolkit