ebanks 6c739e30e0 1. Removing an old version of the Genotype interface which is no longer being used. Needed to do this now so that the naming conflicts would cease. ... 2. Adding a preliminary version of the new Genotype/Allele interface (putting it into refdata/ as the VariantContext really only applies to rods) with updates to VariantContext. This is by no means complete - further updates coming tomorrow. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2533 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-07 05:51:10 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	1. Removing an old version of the Genotype interface which is no longer being used. Needed to do this now so that the naming conflicts would cease.	2010-01-07 05:51:10 +00:00
test/org/broadinstitute/sting	1. Removing an old version of the Genotype interface which is no longer being used. Needed to do this now so that the naming conflicts would cease.	2010-01-07 05:51:10 +00:00