hanna 01a3cb27c7 @Required / @Allows flags for main arguments. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@751 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-19 23:26:17 +00:00
..
dataSources	@Required / @Allows flags for main arguments.	2009-05-19 23:26:17 +00:00
executive	@Required / @Allows flags for main arguments.	2009-05-19 23:26:17 +00:00
iterators	@Required / @Allows flags for main arguments.	2009-05-19 23:26:17 +00:00
refdata	@Required / @Allows flags for main arguments.	2009-05-19 23:26:17 +00:00
traversals	Rename TraverseLociByReference to TraverseLoci to represent its new function.	2009-05-18 01:31:57 +00:00
walkers	@Required / @Allows flags for main arguments.	2009-05-19 23:26:17 +00:00
CommandLineGATK.java	Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along	2009-05-15 21:02:12 +00:00
GATKArgumentCollection.java	Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along	2009-05-15 21:02:12 +00:00
GenomeAnalysisEngine.java	@Required / @Allows flags for main arguments.	2009-05-19 23:26:17 +00:00
LocusContext.java	1. Added a by-interval traversal.	2009-04-24 04:33:35 +00:00
OutputTracker.java	N-way parallelism. Works for small test cases. Untested for large test cases.	2009-05-01 19:34:09 +00:00
Reads.java	Switch TraverseByLoci over to new sharding system, and cleanup some code in passing read files along	2009-05-15 21:02:12 +00:00
WalkerManager.java	@Required / @Allows flags for main arguments.	2009-05-19 23:26:17 +00:00