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gatk3的最后一个经典版本3.8
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Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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hanna 6c27a9bfc6 - Include the fasta index builder in the package. 
- Unit/integration  test against the jars built to the dist directory, so that 
  the tests reveal classes that don't exist in the final jars.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4234 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-09-08 20:37:54 +00:00
R More plots in report 2010-09-08 02:56:51 +00:00
archive Cleaning up playground utils and tests 2010-08-27 01:25:47 +00:00
c Reduce file handle usage. 2010-01-05 18:03:01 +00:00
doc removing the custom reflections library from the libs, and adding a release version. Hopefully this will fix the problem Menachem has been seeing with random JVM crashes. Also 2010-08-19 00:42:37 +00:00
java PhasingEvaluator prints out interesting sites (only 1 phased, or phases disagree) 2010-09-08 18:21:21 +00:00
matlab Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function 2009-11-30 20:02:25 +00:00
packages Fix for DoC issue with multiplexer -- will retire use of multiplexer when 2010-09-07 00:44:07 +00:00
perl One more fix: exclude input VCF file's directory name from the output file. 2010-09-08 03:09:08 +00:00
python Minor usability improvements to reporting tool 2010-09-08 02:56:25 +00:00
ruby accidentally commited an old tool 2010-08-25 15:42:02 +00:00
scala At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00
settings The battle is over. Picard is revved. 2010-09-03 05:28:01 +00:00
shell Useful script to see the status of gsa computing resources. Crontab'd and will be arriving as email at 8 am 2010-08-07 12:36:28 +00:00
testdata and add changes to the vcf used in testing 2010-06-25 02:56:02 +00:00
LICENSE Adding a license to the root directory in case BOSC checks for one. Has the 2010-04-20 16:04:29 +00:00
build.xml - Include the fasta index builder in the package. 2010-09-08 20:37:54 +00:00
ivy.xml Okay, finally done with VCF compression. Now: 2010-08-24 16:36:54 +00:00