Mark DePristo e484625594 GenotypesContext now updates cached data for add, set, replace operations when possible ... -- Involved separately managing the sample -> offset and sample sorted list operations. This should improve performance throughout the system		2011-11-22 08:40:48 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	GenotypesContext now updates cached data for add, set, replace operations when possible	2011-11-22 08:40:48 -05:00