Mark DePristo 3060a4a15e Support for list of known CNVs in VariantEval ... -- VariantSummary now includes novelty of CNVs by reciprocal overlap detection using the standard variant eval -knownCNVs argument -- Genericizes loading for intervals into interval tree by chromosome -- GenomeLoc methods for reciprocal overlap detection, with unit tests		2011-11-30 17:05:16 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Support for list of known CNVs in VariantEval	2011-11-30 17:05:16 -05:00