gatk3的最后一个经典版本3.8

Mark DePristo 6bd0ec8de4 Proper likelihoods and posterior probability of the joint allele frequency in IndependentAllelesDiploidExactAFCalc ... -- Fixed minor numerical stability issue in AFCalcResult -- posterior of joint A/B/C is 1 - (1 - P(D | AF_b == 0)) x (1 - P(D | AF_c == 0)), for any number of alleles, obviously. Now computes the joint posterior like this, and then back-calculates likelihoods that generate these posteriors given the priors. It's not pretty but it's the best thing to do		2012-10-16 08:11:06 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Removing ConstrainedAFCalculationModel; AFCalcPerformanceTest	2012-10-16 08:11:06 -04:00
public	Proper likelihoods and posterior probability of the joint allele frequency in IndependentAllelesDiploidExactAFCalc	2012-10-16 08:11:06 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00