gatk3的最后一个经典版本3.8

andrewk 6bcdac5c62 Restructured AlleleFrequency classes into 3 classes: AlleleFrequencyWalker, AlleleFrequencyMetricsWalker, AlleleFrequencyEstimate. AlleleFrequencyMetricsWalker class now calls mapper function of AlleleFrequencyWalker and works with the result. AlleleFrequencyEstimate is now a separate class instead of a subclass of AlleleFrequencyWalker. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@102 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-19 22:06:01 +00:00
core/java/src/org/broadinstitute/sting	Moved extra walkers at Mark's request.	2009-03-18 23:52:08 +00:00
doc	Hello, world! for GATK.	2009-03-19 21:46:22 +00:00
playground	Restructured AlleleFrequency classes into 3 classes: AlleleFrequencyWalker, AlleleFrequencyMetricsWalker, AlleleFrequencyEstimate. AlleleFrequencyMetricsWalker class now calls mapper function of AlleleFrequencyWalker and works with the result. AlleleFrequencyEstimate is now a separate class instead of a subclass of AlleleFrequencyWalker.	2009-03-19 22:06:01 +00:00
settings	Moved build.xml, ivy.xml and settings to root of Sting repository.	2009-03-18 19:13:19 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Move the basic gatk framework into the core subtree.	2009-03-18 23:39:00 +00:00
ivy.xml	Added dependences on two libraries: the Colt package, which is a collection of high performance computing libraries from CERN; and Log4j, which will be our new logging platform.	2009-03-19 16:16:31 +00:00