Mark DePristo 6bbe750e03 Continuing work on IndependentAllelesDiploidExactAFCalc ... -- Continuing to get IndependentAllelesDiploidExactAFCalc working correctly. A long way towards the right answer now, but still not there -- Restored (but not tested) OriginalDiploidExactAFCalc, the clean diploid O(N) version for Ryan -- MathUtils.normalizeFromLog10 no longer returns -Infinity when kept in log space, enforces the min log10 value there -- New convenience method in VariantContext that looks up the allele index in the alleles		2012-10-15 07:53:56 -04:00
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src/org/broadinstitute/sting	Intermediate commit on the path to getting a working IndependentAllelesDiploidExact calculation	2012-10-15 07:53:56 -04:00
test/org/broadinstitute/sting/gatk/walkers	Continuing work on IndependentAllelesDiploidExactAFCalc	2012-10-15 07:53:56 -04:00