gatk3的最后一个经典版本3.8

Mark DePristo 6bbe750e03 Continuing work on IndependentAllelesDiploidExactAFCalc ... -- Continuing to get IndependentAllelesDiploidExactAFCalc working correctly. A long way towards the right answer now, but still not there -- Restored (but not tested) OriginalDiploidExactAFCalc, the clean diploid O(N) version for Ryan -- MathUtils.normalizeFromLog10 no longer returns -Infinity when kept in log space, enforces the min log10 value there -- New convenience method in VariantContext that looks up the allele index in the alleles		2012-10-15 07:53:56 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Continuing work on IndependentAllelesDiploidExactAFCalc	2012-10-15 07:53:56 -04:00
public	Continuing work on IndependentAllelesDiploidExactAFCalc	2012-10-15 07:53:56 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00