depristo db40e28e54 ReadBackedPileup in all its glory. Documented, aligned with the output of LocusIteratorByState, and caching common outputs for performance ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2165 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-25 20:54:44 +00:00
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TraversalEngine.java	cleanup of the traversal output code	2009-11-12 06:18:10 +00:00
TraversalStatistics.java	Fixes for including duplicate reads in the locus traversal; now checks that the ref arg is provided when needed	2009-04-17 01:27:36 +00:00
TraverseDuplicates.java	cleanup of the traversal output code	2009-11-12 06:18:10 +00:00
TraverseLoci.java	cleanup of the traversal output code	2009-11-12 06:18:10 +00:00
TraverseLocusWindows.java	ReadBackedPileup in all its glory. Documented, aligned with the output of LocusIteratorByState, and caching common outputs for performance	2009-11-25 20:54:44 +00:00
TraverseReads.java	cleanup of the traversal output code	2009-11-12 06:18:10 +00:00
package.html	Package level documentation -- helps new users get acclimated to the codebase more quickly.	2009-06-17 16:27:48 +00:00