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R
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No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.
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2011-10-27 14:17:07 -04:00 |
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baq
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Putative fix for BAQ array out of bounds
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2011-09-21 11:25:08 -04:00 |
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clipreads
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Fixing conflicts
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2011-10-03 19:07:59 -07:00 |
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codecs
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Removing all instances of -BTI (in tests and in GATKdocs) and replacing them with the appropriate alternative.
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2011-10-27 23:55:11 -04:00 |
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collections
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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fasta
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Reduced the number of combinations being tested here, which was overkill
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2011-09-01 10:42:43 -04:00 |
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fragments
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Generalized Reads -> Fragment calculation
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2011-10-26 15:54:38 -04:00 |
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genotype/vcf
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Make DiploidGenotype enum private to walkers.genotyper
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2011-09-24 08:48:33 -04:00 |
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interval
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Empty ROD files should generate an exception when used for creating intervals. Moved some now obsolete files to the archive as the realigner will now read all target intervals into memory.
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2011-10-28 09:23:25 -04:00 |
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io
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Embedding gsalib source and queueJobReport R scripts in the dist and package jars.
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2011-10-24 15:58:34 -04:00 |
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pileup
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Generalized Reads -> Fragment calculation
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2011-10-26 15:54:38 -04:00 |
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report
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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runtime
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No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.
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2011-10-27 14:17:07 -04:00 |
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sam
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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text
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GATKReport v0.2:
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2011-08-03 00:24:47 -04:00 |
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threading
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Removed GATK use of distributed parallelism framework.
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2011-07-20 16:26:09 -04:00 |
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variantcontext
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Modified the VCFJarClassLoadingUnitTest to play nice with the packaged-jar test targets.
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2011-10-25 14:47:15 -04:00 |
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BaseUtilsUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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GenomeLocParserUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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GenomeLocSortedSetUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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GenomeLocUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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MWUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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MathUtilsUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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PathUtilsUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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ReadUtilsUnitTest.java
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Moving reduced read functionality into GATKSAMRecord
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2011-10-21 13:28:05 -04:00 |
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ReservoirDownsamplerUnitTest.java
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Moving reduced read functionality into GATKSAMRecord
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2011-10-21 13:28:05 -04:00 |
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SimpleTimerUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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UtilsUnitTest.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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