Mark DePristo 6b8b7df651 Queue now understands -nct and requests the appropriate number of cores from LSF, SGE, etc ... -- NCT wasn't previously recognized by Queue as needing more processors per machine. This commit fixes this. Also a potential cause of poor GATKPerformanceOverTime, in that runs with -nct could flood a node and cause it to have hundreds of cores in contention.		2012-10-25 17:26:58 -04:00
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alignment	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
commandline	Added explicit @ClassType annotations to @Argument for Option[Int] or Option[Double] since scala seems to change the reflected type to Option[Object] on some systems.	2012-10-19 13:20:29 -04:00
gatk	add the CEUtrio best practices results (UG + PBT) to the bundle	2012-10-25 15:36:17 -04:00
jna	…
queue	Queue now understands -nct and requests the appropriate number of cores from LSF, SGE, etc	2012-10-25 17:26:58 -04:00
utils	BaseRecalibration: don't cache instances of ReadCovariates across reads	2012-10-25 17:02:55 -04:00