Mark DePristo 6b639f51f0 Finalizing new exact model and tests ... -- New capabilities in IndependentAllelesDiploidExactAFCalc to actually apply correct theta^n.alt.allele prior. -- Tests that theta^n.alt.alleles is being applied correctly -- Bugfix: keep in logspace when computing posterior probability in toAFCalcResult in AFCalcResultTracker.java -- Bugfix: use only the alleles used in genotyping when assessing if an allele is polymorphic in a sample in UnifiedGenotyperEngine		2012-10-15 07:53:57 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Finalizing new exact model and tests	2012-10-15 07:53:57 -04:00
test	Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable	2012-10-12 00:48:42 -04:00