gatk3的最后一个经典版本3.8

Mark DePristo 6b639f51f0 Finalizing new exact model and tests ... -- New capabilities in IndependentAllelesDiploidExactAFCalc to actually apply correct theta^n.alt.allele prior. -- Tests that theta^n.alt.alleles is being applied correctly -- Bugfix: keep in logspace when computing posterior probability in toAFCalcResult in AFCalcResultTracker.java -- Bugfix: use only the alleles used in genotyping when assessing if an allele is polymorphic in a sample in UnifiedGenotyperEngine		2012-10-15 07:53:57 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Finalizing new exact model and tests	2012-10-15 07:53:57 -04:00
public	Finalizing new exact model and tests	2012-10-15 07:53:57 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00