gatk3的最后一个经典版本3.8

Geraldine Van der Auwera 6b4d88ebe9 Created ListAnnotations utility (extends CommandLineProgram) ... --Refactored listAnnotations basic method out of VA into HelpUtils --HelpUtils.listAnnotations() is now called by both VA and the new ListAnnotations utility (lives in sting.tools) --This way we keep the VA --list option but we also offer a way to list annotations without a full valid VA command-line, which was a pain users continually complained about --We could get rid of the VA --list option altogether ...?		2013-03-20 06:15:27 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Made some documentation updates & fixes	2013-03-20 06:15:20 -04:00
public	Created ListAnnotations utility (extends CommandLineProgram)	2013-03-20 06:15:27 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00