Mauricio Carneiro 6ae3f9e322 Wrapped clipping op information ... The clipping op extra information being kept by this walker was specific to the walker, not to the read clipper. Created a wrapper ReadClipperWithData class that keeps the extra information and leaves the ReadClipper slim. (this is a quick commit to unbreak the build, performing integration tests and will make further commits if necessary)		2011-08-14 15:44:48 -04:00
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R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	Wrapped clipping op information	2011-08-14 15:44:48 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-08-10 16:57:34 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00