depristo 6ab9ddf9f5 Significant output formatting improvements. SNPs as indels analysis. heterozygosity rate calculations ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1478 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-29 21:49:09 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Significant output formatting improvements. SNPs as indels analysis. heterozygosity rate calculations	2009-08-29 21:49:09 +00:00
test/org/broadinstitute/sting	Support for original quality scores OQ flag. pQ flag in TableRecalibation to preserve quality scores below a threshold (defaulting to 5)	2009-08-28 14:14:21 +00:00