gatk-3.8/protected/java
Eric Banks 6a903f2c23 I finally gave up on trying to get the Haplotype/Allele merging to work in the HaplotypeCaller.
I've resigned myself instead to create a mapping from Allele to Haplotype.  It's cheap so not a big deal, but really shouldn't be necessary.
Ryan and I are talking about refactoring for GATK2.5.
2013-01-18 01:21:08 -05:00
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src/org/broadinstitute/sting I finally gave up on trying to get the Haplotype/Allele merging to work in the HaplotypeCaller. 2013-01-18 01:21:08 -05:00
test/org/broadinstitute/sting I finally gave up on trying to get the Haplotype/Allele merging to work in the HaplotypeCaller. 2013-01-18 01:21:08 -05:00