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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk
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Eric Banks 12fc198b80 Added better error message for BAMs with bad read groups. 
* Split the cases into reads that don't have a RG at all vs. those with a RG that's not defined in the header.
  * Added integration tests to make sure that the correct error is thrown.
  * Resolved GSA-407.
 		2013-02-27 16:02:56 -05:00
..
datasources Re-enabled fastBAMindexing by replacing the FileChannel with a SeekableBufferedStream 2013-02-14 17:51:15 -05:00
downsampling Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
executive Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Added better error message for BAMs with bad read groups. 2013-02-27 16:02:56 -05:00
iterators Refactor LIBS into utils.locusiterator before refactoring 2013-01-11 15:17:16 -05:00
refdata Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
report Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
samples Updating TestNG to the latest version 2013-02-22 09:40:23 -05:00
traversals Collapse the downsampling fork in the GATK engine 2013-01-28 01:50:30 -05:00
walkers Fix runtime public -> protected dependencies in the test suite 2013-02-26 21:19:12 -05:00
CommandLineGATKUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
EngineFeaturesIntegrationTest.java Fix runtime public -> protected dependencies in the test suite 2013-02-26 21:19:12 -05:00
GenomeAnalysisEngineUnitTest.java ActivityProfile and ActiveRegions respects engine interval boundaries 2013-02-18 10:40:25 -05:00
MaxRuntimeIntegrationTest.java Fix runtime public -> protected dependencies in the test suite 2013-02-26 21:19:12 -05:00
WalkerManagerUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00