Eric Banks 69b8173535 Replace uses of NestedHashMap with NestedIntegerArray. ... * Removed from codebase NestedHashMap since it is unused and untested. * Integration tests change because the BQSR CSV is now sorted automatically. * Resolves GSA-732		2013-02-27 14:03:39 -05:00
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downsampling	-Added Per-Sample Contamination Removal to UnifiedGenotyper: Added an @Advanced option to the StandardCallerArgumentCollection, a file which should	2013-02-04 18:24:36 -05:00
walkers	Replace uses of NestedHashMap with NestedIntegerArray.	2013-02-27 14:03:39 -05:00