ebanks 6a6cdc1925 Adding minor usage docs ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4765 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-01 17:34:33 +00:00
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alignment	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
analyzecovariates	Updating doc text	2010-11-24 21:34:14 +00:00
commandline	Added the ability to test pipelines in dry or live mode via 'ant pipelinetest' and 'ant pipelinetest -Dpipeline.run=run'.	2010-11-22 22:59:42 +00:00
datasources/pipeline	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00
gatk	Adding minor usage docs	2010-12-01 17:34:33 +00:00
oneoffprojects	Not supported. I'm checking this in for Ryan only.	2010-11-30 16:59:18 +00:00
playground	Fare thee well, UGv1. Here come the days UGv2.	2010-11-29 21:51:19 +00:00
queue	Updated the Queue GATK generator and packaging to include more dependencies for fullCallingPipeline.q.	2010-11-30 15:29:40 +00:00
utils	SW-turbo. Kind of. This implementation is presumably equivalent to the old one (mathematically), but runs ~10 times faster: inner loops eliminated completely. The author of the original implementation should be sentenced to the galleys. Oh, that would be me...	2010-12-01 00:08:47 +00:00