Guillermo del Angel f176c854c6 Swapping in logless Pair HMM for default usage with UG: ... -- Changed default HMM model. -- Removed check. -- Changed md5's: PL's in the high 100s change by a point or two due to new implementation. -- Resulting performance improvement is about 30 to 50% less runtime when using -glm INDEL.		2013-06-18 10:06:27 -04:00
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gatk	Swapping in logless Pair HMM for default usage with UG:	2013-06-18 10:06:27 -04:00
utils	HC bam writer now sets the read to MQ0 if it isn't informative	2013-06-13 10:11:54 -04:00
package-info.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00