| .. |
|
vcf
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
HiSeq.10000.bgzip.vcf.gz
|
Adding bgzip vcf file for unit tests
|
2011-09-21 15:39:45 -04:00 |
|
HiSeq.10000.vcf
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
HiSeq.10000.vcf.gz
|
GZIP VCF for testing
|
2011-08-19 09:05:39 -04:00 |
|
ILLUMINA.wex.broad_phase2_baseline.20111114.both.exome.genotypes.1000.vcf
|
New complex VCF files for testing
|
2012-05-24 10:57:05 -04:00 |
|
TabularDataTest.dat
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
TabularDataTest2.dat
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
ValidatingPileupTargets.list
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
ac0.vcf
|
VariantEval now includes -keepAC0 argument to include sites with alt alleles but AC 0 in analyses
|
2012-04-04 15:37:12 -04:00 |
|
breakpoint-example.vcf
|
Added support for breakpoint alleles
|
2012-02-23 12:14:48 -05:00 |
|
ceutrio.ped
|
Oops, forgot the PED test file
|
2011-10-05 21:09:08 -07:00 |
|
dbsnp_135.b37.1000.vcf
|
New complex VCF files for testing
|
2012-05-24 10:57:05 -04:00 |
|
defaultGATKConfig.cfg
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
diffTestMaster.vcf
|
First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure.
|
2011-07-04 16:11:42 -04:00 |
|
diffTestTest.vcf
|
First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure.
|
2011-07-04 16:11:42 -04:00 |
|
exampleBAM.bam
|
PPP pipeline test
|
2011-12-11 17:32:21 -05:00 |
|
exampleBAM.bam.bai
|
PPP pipeline test
|
2011-12-11 17:32:21 -05:00 |
|
exampleBAM.simple.bai
|
Testdata for diffObjects.
|
2011-07-18 10:47:03 -04:00 |
|
exampleBAM.simple.bam
|
Testdata for diffObjects.
|
2011-07-18 10:47:03 -04:00 |
|
exampleDBSNP.vcf
|
PPP pipeline test
|
2011-12-11 17:32:21 -05:00 |
|
exampleFASTA.dict
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
exampleFASTA.fasta
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
exampleFASTA.fasta.amb
|
Data Processing Pipeline Test
|
2011-12-12 00:24:51 -05:00 |
|
exampleFASTA.fasta.ann
|
Data Processing Pipeline Test
|
2011-12-12 00:24:51 -05:00 |
|
exampleFASTA.fasta.bwt
|
Data Processing Pipeline Test
|
2011-12-12 00:24:51 -05:00 |
|
exampleFASTA.fasta.fai
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
exampleFASTA.fasta.pac
|
Data Processing Pipeline Test
|
2011-12-12 00:24:51 -05:00 |
|
exampleFASTA.fasta.rbwt
|
Data Processing Pipeline Test
|
2011-12-12 00:24:51 -05:00 |
|
exampleFASTA.fasta.rpac
|
Data Processing Pipeline Test
|
2011-12-12 00:24:51 -05:00 |
|
exampleFASTA.fasta.rsa
|
Data Processing Pipeline Test
|
2011-12-12 00:24:51 -05:00 |
|
exampleFASTA.fasta.sa
|
Data Processing Pipeline Test
|
2011-12-12 00:24:51 -05:00 |
|
exampleGRP.grp
|
Extensive refactoring of the GATKReports. This was a beast.
|
2012-05-18 01:11:26 -04:00 |
|
exampleNORG.bam
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
exampleNORG.bam.bai
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
gFFTest.gff
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
gatkrunreport.fail.xml
|
analyzeRunReports cleanup for new minimal GATKRunReport structure
|
2012-03-12 09:46:26 -04:00 |
|
gatkrunreport.success.xml
|
analyzeRunReports cleanup for new minimal GATKRunReport structure
|
2012-03-12 09:46:26 -04:00 |
|
genotypes_chr1_ASW_phase3.3_first500.hapmap
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
logisticParamsTest.list
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
overlapTest.bed
|
Testdata for IntervalStratification
|
2011-11-10 11:08:34 -05:00 |
|
recalConfig_1KG.cfg
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
sampleBedFile.bed
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
small.dbsnp.rod
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
tranches.4.txt
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
tranches.6.txt
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
tranches.raw.dat
|
Reorganized the codebase beneath top-level public and private directories,
|
2011-06-28 06:55:19 -04:00 |
|
withSymbolic.b37.vcf
|
Testdata for IntervalStratification
|
2011-11-10 11:08:34 -05:00 |
ac7460ef8c