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gatk-3.8/public/java/test/org/broadinstitute/sting/utils/recalibration
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Mark DePristo 69bf70c42e Cleanup and more unit tests for RecalibrationTables in BQSR 
-- Added unit tests for combining RecalibrationTables.  As a side effect now has serious tests for incrementDatumOrPutIfNecessary
-- Removed unnecessary enum.index system from RecalibrationTables.
-- Moved what were really static utility methods out of RecalibrationEngine and into RecalUtils.
 		2013-01-05 12:50:27 -05:00
..
ContextCovariateUnitTest.java Cleanup BQSR classes 2012-07-31 08:11:03 -04:00
CycleCovariateUnitTest.java The user can now set the maximum allowable cycle on the command-line with --maximum_cycle_value. This value is (now) enforced in the Cycle covariate and a User Error is thrown if the maximum value is passed (with a helpful error message). Added unit tests to cover this new functionality. 2012-11-20 22:41:57 -05:00
EventTypeUnitTest.java Cleanup and unit tests for EventType and ReadRecalibrationInfo in BQSR 2013-01-04 11:39:25 -05:00
QualQuantizerUnitTest.java Ready for full-scale evaluation adaptive BQSR contexts 2012-08-03 16:02:53 -04:00
ReadCovariatesUnitTest.java Cleanup BQSR classes 2012-07-31 08:11:03 -04:00
ReadGroupCovariateUnitTest.java Cleanup BQSR classes 2012-07-31 08:11:03 -04:00
RecalDatumUnitTest.java Minor cleanup and expansion of the RecalDatum unit tests 2012-12-24 13:35:58 -05:00
RecalUtilsUnitTest.java BQSR optimization: read group x quality score calibration table is thread-local 2012-12-24 13:35:58 -05:00
RecalibrationReportUnitTest.java Cleanup and more unit tests for RecalibrationTables in BQSR 2013-01-05 12:50:27 -05:00
RecalibrationTablesUnitTest.java Cleanup and more unit tests for RecalibrationTables in BQSR 2013-01-05 12:50:27 -05:00
RecalibrationTestUtils.java BQSR optimization: read group x quality score calibration table is thread-local 2012-12-24 13:35:58 -05:00