Mark DePristo 69bf70c42e Cleanup and more unit tests for RecalibrationTables in BQSR ... -- Added unit tests for combining RecalibrationTables. As a side effect now has serious tests for incrementDatumOrPutIfNecessary -- Removed unnecessary enum.index system from RecalibrationTables. -- Moved what were really static utility methods out of RecalibrationEngine and into RecalUtils.		2013-01-05 12:50:27 -05:00
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commandline	Move VCF/BCF2/VariantContext to new standalone org.broadinstitute.variant package	2012-12-19 10:25:22 -05:00
gatk	Merge branch 'master' of github.com:broadinstitute/gsa-unstable	2013-01-04 17:15:22 -05:00
jna	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00
utils	Cleanup and more unit tests for RecalibrationTables in BQSR	2013-01-05 12:50:27 -05:00
AutoFormattingTimeUnitTest.java	AutoFormattingTime cleanup and complete unittests	2013-01-02 11:29:25 -05:00
BaseTest.java	AutoFormattingTime cleanup and complete unittests	2013-01-02 11:29:25 -05:00
MD5DB.java	Finalizing BCF2 mark III commit	2012-06-21 15:16:27 -04:00
MD5Mismatch.java	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
TestNGTestTransformer.java	Add custom TestNGTestTransformer that adds a maximum test runtime of 10 minutes to all testng tests	2012-11-01 15:34:12 -04:00
WalkerTest.java	Move VCF/BCF2/VariantContext to new standalone org.broadinstitute.variant package	2012-12-19 10:25:22 -05:00