Eric Banks 69b8173535 Replace uses of NestedHashMap with NestedIntegerArray. ... * Removed from codebase NestedHashMap since it is unused and untested. * Integration tests change because the BQSR CSV is now sorted automatically. * Resolves GSA-732		2013-02-27 14:03:39 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Replace uses of NestedHashMap with NestedIntegerArray.	2013-02-27 14:03:39 -05:00
test	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00