gatk3的最后一个经典版本3.8

Eric Banks 69b8173535 Replace uses of NestedHashMap with NestedIntegerArray. ... * Removed from codebase NestedHashMap since it is unused and untested. * Integration tests change because the BQSR CSV is now sorted automatically. * Resolves GSA-732		2013-02-27 14:03:39 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Replace uses of NestedHashMap with NestedIntegerArray.	2013-02-27 14:03:39 -05:00
public	Replace uses of NestedHashMap with NestedIntegerArray.	2013-02-27 14:03:39 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00