gatk3的最后一个经典版本3.8

Mauricio Carneiro 69b56e11c8 ReadClipper won't modify the original read ... Reverting back to the original implementation, but now including write N's and write Q0's due to walkers that look at the same read multiple times in different reference windows		2012-08-29 11:33:19 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Initial commit of the delocalized BQSR written as a read walker.	2012-08-28 15:24:20 -04:00
public	ReadClipper won't modify the original read	2012-08-29 11:33:19 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00