David Roazen caafe84e74 Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central ... -We now pull htsjdk and picard from maven central. -Updated the GATK codebase as necessary to adapt to changes in the Feature interface. -Since VCFHeader now requires that all header lines have unique keys, uniquified the keys of GVCFBlock header lines by including the min/max GQ in the key. Updated MD5s accordingly. -Other MD5s changed as a result of an htsjdk fix to eliminate "-0" in VCF output.		2015-05-14 15:26:23 -04:00
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com/google/code/cofoja/cofoja/1.0-r139	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
net/sf/snpeff/snpeff/2.0.5	Revved picard libraries.	2014-05-08 19:13:27 +08:00
sysinternals/junction/1.04	Adding sysinternals:junction:1.04:exe to local repo.	2014-10-24 05:33:47 +08:00