gatk-3.8

History

ebanks 6934f83cc7 Two changes to CombineVariants. 1. Fix: VCs were padded before the merge, but they were never unpadded afterwards. This leaves us with a VC that doesn't meet our spec. 2. Update: instead of running the merged VC through every standard annotation (which seems really wrong, since this isn't the annotator tool), just update the chromosome count annotations (AC,AF,AN) through VCUtils. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4734 348d0f76-0448-11de-a6fe-93d51630548a	2010-11-25 04:52:12 +00:00
..
net/sf/picard/reference	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
org/broadinstitute/sting	Two changes to CombineVariants.	2010-11-25 04:52:12 +00:00

ebanks 6934f83cc7 Two changes to CombineVariants.

1. Fix: VCs were padded before the merge, but they were never unpadded afterwards.  This leaves us with a VC that doesn't meet our spec.
2. Update: instead of running the merged VC through every standard annotation (which seems really wrong, since this isn't the annotator tool), just update the chromosome count annotations (AC,AF,AN) through VCUtils.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4734 348d0f76-0448-11de-a6fe-93d51630548a

2010-11-25 04:52:12 +00:00

net/sf/picard/reference

Changing testing framework from junit -> testng, for its enhanced configurability.

2010-11-01 21:31:44 +00:00

org/broadinstitute/sting

Two changes to CombineVariants.

2010-11-25 04:52:12 +00:00