depristo 69132c81aa Documentation. Plus nicer structure to adaptors. Intermediate checkin before move into core ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2783 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-05 13:33:27 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Documentation. Plus nicer structure to adaptors. Intermediate checkin before move into core	2010-02-05 13:33:27 +00:00
test/org/broadinstitute/sting	Interface changes following Matt's advice. VariantContexts are now immutable, and there are special mutable versions, in case you need to change things. AttributedObject now a InferredGeneticContext and package protected. VariantContexts are now named, which makes them easier to use with the rod system	2010-02-04 20:55:49 +00:00