depristo 68fa6da788 Initial graph-based reference implementation and alignment assessor. Not suitable for public use ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1921 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-27 21:54:47 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Initial graph-based reference implementation and alignment assessor. Not suitable for public use	2009-10-27 21:54:47 +00:00
test/org/broadinstitute/sting	a fix for traverse dupplicates bug: GSA-202. Also removed some debugging output from FastaAltRef walker	2009-10-26 20:18:55 +00:00