gatk-3.8/public
Mark DePristo 68eed7b313 Optimizations for VCF and BCF2
-- encodeTyped in BCF2Encoder now with specialized versions for int, float, and string, avoiding unnecessary intermediate list creation and dynamic type checking.  encodeTypedMissing also includes inline operations now instead of using Collections.emptyList() version.  Lots of contracts.  User code updated to use specialized versions where possible
-- Misc code refactoring
-- Updated VCF float formating to always include 3 sig digits for values < 1, and 2 for > 1.  Updating MD5s accordingly
-- Expanded testing of BCF2Decoder to really use all of the encodeTyped* operations
2012-06-14 16:42:39 -04:00
..
R Bugfix for R 2.15 not including reshape 2012-06-14 16:42:29 -04:00
c
chainFiles
doc
java Optimizations for VCF and BCF2 2012-06-14 16:42:39 -04:00
keys Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
packages Temporary fake release directories for Bamboo testing purposes 2012-05-31 16:04:07 -04:00
perl
scala MD5DB for integrationtest management now writes out a md5mismatches files for clean analysis 2012-06-14 16:42:27 -04:00
testdata More testdata test files 2012-06-14 16:42:35 -04:00