gatk3的最后一个经典版本3.8

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Laura Gauthier 68a2f1243d Finished draft of code for new map-combine-reduce annotation framework All VQSR annotations can be generated in allele-specific mode Pull out allele-specific annotations in AS_Standard annotation group		2015-10-27 09:44:49 -04:00
licensing	Updated licenses for 2015	2015-08-06 15:23:11 -04:00
protected	Finished draft of code for new map-combine-reduce annotation framework	2015-10-27 09:44:49 -04:00
public	Finished draft of code for new map-combine-reduce annotation framework	2015-10-27 09:23:29 -04:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`.	2015-09-14 12:20:36 -04:00

The Genome Analysis Toolkit