Yossi Farjoun d419a33ed1 * Added an integration test for AD annotation in the Haplotype caller. ... * Corrected FS Anotation for UG as for AD. * HC still does not annotate ReducedReads correctly (for FS nor AD)		2012-10-05 15:23:59 -04:00
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src/org/broadinstitute/sting	Add a separate max alt alleles argument for indels that defaults to 2 instead of 3. PLEASE TAKE NOTE.	2012-10-04 13:52:14 -04:00
test/org/broadinstitute/sting/gatk/walkers	* Added an integration test for AD annotation in the Haplotype caller.	2012-10-05 15:23:59 -04:00