Eric Banks 7897d52f32 Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec). ... * As reported here: http://gatkforums.broadinstitute.org/discussion/comment/4270#Comment_4270 * This was a commit into the variant.jar; the changes here are a rev of that jar and handling of errors in VF * Added integration test to confirm failure with User Error * Removed illegal header line in KB test VCF that was causing related tests to fail.		2013-04-05 00:52:32 -04:00
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com.google.code.caliper	Killed sonatype repository; it's failed me too many times at this point.	2011-06-09 16:07:02 +00:00
com.google.code.cofoja	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
edu.mit.broad	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
gov.nist	Adding Jama for Ryan.	2010-04-27 14:30:36 +00:00
net.sf	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
net.sf.gridscheduler	Switched GridEngine from looking from environment variable to using embedded jar.	2011-07-05 21:59:00 -04:00
net.sf.snpeff	SnpEff 2.0.5 support. Re-enabled SnpEff in the HybridSelectionPipeline.	2012-01-03 15:18:36 -05:00
org.broad	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
org.broadinstitute	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00