gatk3的最后一个经典版本3.8

Guillermo del Angel 67c89cadad Fixes for pool caller to match UG outputs at certain sites: implement min base qual/min mapping qual read filter so those reads are filtered from pileups, and implemented filter for sites that have a too large a fraction of deletions		2012-01-26 12:52:00 -05:00
public	Catch exception for bad type and throw as a TribbleException	2012-01-25 12:15:51 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2012-01-24 15:19:29 -05:00
ivy.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00