Khalid Shakir 677bea0abd Right aligning GATKReport numeric columns and updated MD5s in tests. ... PreQC parses file with spaces in sample names by using tabs only. PostQC allows passing the file names for the evals so that flanks can be evaled. BaseTest's network temp dir now adds the user name to the path so files aren't created in the root. HybridSelectionPipeline: - Updated to latest versions of reference data. - Refactored Picard parsing code replacing YAML.		2011-12-05 23:22:15 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Right aligning GATKReport numeric columns and updated MD5s in tests.	2011-12-05 23:22:15 -05:00